TEMpy documentation

Release:1.0.0 Date:January 17, 2014

TEMpy is a object-oriented Python library designed to help the user manipulate and analyse atomic structures and density maps from 3D EM. TEMpy will eventually be expanded to include a suite of functions for fitting and the assessment of fits, as well as being a toolkit for users to build their own, personalised, functions. TEMpy makes use of open source software including NumPy (http://www.numpy.org/), SciPy (http://www.scipy.org/) and Biopython (http://biopython.org/)

Warning Please be aware that this is alpha software that most definitely contains bugs.

Source code is available from http://XXXX under the GNU Public Licence, version 2, together with some additional documentation.

Contributors: Daven Vasishtan, Irene Farabella, Arun Prasad Pandurangan, Harpal Sahota, Frank Alber and Maya Topf.

Funding: ...

Citation

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Contents:

• 1. Installation on Linux & Mac OSX
• 2. Overview over TEMpy
• 3. Parser for Structure Instance
• 4. Structure Instance Informations
• 5. Parser for Density Map Instance
• 6. Density Map Generation
• 7. Density Map Instance Informations
• 8. Generation an Ensemble of Structure Instance
• 9. Scoring Functions
• 10. Core Modules : Vector
• 11. Core Modules : TransformParser

Indices and tables

• Index
• Module Index
• Search Page