3. Parser for Structure Instance

class PDBParser.PDBParser

A class to read PDB files either directly from the pdb or a structure instance from Biopython

static bio_strcuture_to_TEMpy(filename, structure, hetatm=False, water=False)

filename = name of pdb file hetatm = Boolean representing whether to add hetatm to the structure.Default and Raccomanded is False. water = Boolean representing whether to add water to the structure.Default and Raccomanded is False.

static fetch_PDB(id, output_file, hetatm=False, water=False)

static read_PDB_file(filename, hetatm=False)

Read PDB file and create Structure instance based upon it.

Argument:

filename

name of pdb file

hetatm

Boolean representing whether the PDB file contains hetatom.