CHANGELOG.rst
CONTRIB.rst
LICENSE.txt
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
bin/conkit-convert
bin/conkit-msatool
bin/conkit-plot
bin/conkit-precision
bin/conkit-predict
conkit/__init__.py
conkit/version.py
conkit.egg-info/PKG-INFO
conkit.egg-info/SOURCES.txt
conkit.egg-info/dependency_links.txt
conkit.egg-info/not-zip-safe
conkit.egg-info/requires.txt
conkit.egg-info/top_level.txt
conkit/applications/__init__.py
conkit/applications/bbcontacts.py
conkit/applications/ccmpred.py
conkit/applications/cdhit.py
conkit/applications/hhblits.py
conkit/applications/hhfilter.py
conkit/applications/jackhmmer.py
conkit/applications/psicov.py
conkit/command_line/__init__.py
conkit/command_line/conkit_convert.py
conkit/command_line/conkit_msatool.py
conkit/command_line/conkit_plot.py
conkit/command_line/conkit_precision.py
conkit/command_line/conkit_predict.py
conkit/core/__init__.py
conkit/core/contact.py
conkit/core/contactfile.py
conkit/core/contactmap.py
conkit/core/entity.py
conkit/core/mappings.py
conkit/core/sequence.py
conkit/core/sequencefile.py
conkit/core/struct.py
conkit/core/ext/__init__.py
conkit/core/ext/c_contactmap.pyx
conkit/core/ext/c_sequencefile.pyx
conkit/io/__init__.py
conkit/io/_cache.py
conkit/io/_iotools.py
conkit/io/_parser.py
conkit/io/a2m.py
conkit/io/a3m.py
conkit/io/bbcontacts.py
conkit/io/bclcontact.py
conkit/io/casp.py
conkit/io/ccmpred.py
conkit/io/clustal.py
conkit/io/comsat.py
conkit/io/epcmap.py
conkit/io/evfold.py
conkit/io/fasta.py
conkit/io/freecontact.py
conkit/io/gremlin.py
conkit/io/jones.py
conkit/io/membrain.py
conkit/io/ncont.py
conkit/io/pcons.py
conkit/io/pdb.py
conkit/io/plmdca.py
conkit/io/psicov.py
conkit/io/rosetta.py
conkit/io/stockholm.py
conkit/misc/__init__.py
conkit/misc/bandwidth.py
conkit/misc/distances.py
conkit/misc/energyfunction.py
conkit/misc/selectalg.py
conkit/misc/selector.py
conkit/misc/ext/__init__.py
conkit/misc/ext/c_bandwidth.pyx
conkit/plot/__init__.py
conkit/plot/contactdensity.py
conkit/plot/contactmap.py
conkit/plot/contactmapchord.py
conkit/plot/contactmapmatrix.py
conkit/plot/figure.py
conkit/plot/precisionevaluation.py
conkit/plot/sequencecoverage.py
conkit/plot/tools.py