Icknield workshop 2023

Icknield Workshop: Model Building, Refinement and Validation for cryo-EM

Course co-organised and kindly hosted at RAL by DLS | October 2023

Lectures

Introduction to CCP-EM – Tom Burnley

Model building in ModelCraft and Buccaneer – Soon Wen Hoh

Hidden errors in cryo-EM derived models (CheckMySequence and FindMySequence) – Grzegorz Chojnowski

Refinement against cryo-EM maps (Refmac/Servalcat) – Rob Nicholls

Likelihood-based docking of models in cryo-EM maps (em_placement) – Randy J Read

Flex-EM and TEMPy-REFF – Maya Topf

Validating glycans (Privateer) – Jon Agirre

EMDB & EMPIAR: Public Archiving of Cryo-EM data – Jack Turner

AlphaFold Protein Structure Database & 3D-Beacons – Mihaly Varadi

Moorhen: Coot on the web – Filomena Sanchez Rodriguez

Model Validation – Agnel Joseph

Tutorials

CCP-EM Doppio based tutorials: Buccaneer-Modelcraft, CheckMySequence-FindMySequence, EM_placement, LocScale, Model-angelo, Refmac-Servalcat, TEMPy-REFF, Privateer, EMDA, Model_validation

Buccaneer-Modelcraft tutorial and data

CheckMySequence-FindMySequence tutorial and data

em_placement tutorial and data

LocScale tutorial and data

Model-Angelo tutorial and data

Refmac-Servalcat tutorial and data

TEMPy-REFF tutorial and data

Privateer tutorial and data

EMDA tutorial

Model Validation tutorial

Other tutorials

Coot Cryo-EM

Isolde tutorial and data