Icknield Workshop: Model Building, Refinement and Validation for cryo-EM
Course co-organised and kindly hosted at RAL by DLS | November 2024
Lectures
Introduction to CCP-EM – Tom Burnley
Model building in ModelCraft and Buccaneer – Paul Bond & Soon Wen Hoh
CheckMySequence and FindMySequence – Grzegorz Chojnowski – TBA
Refinement against cryo-EM maps (Refmac/Servalcat) – Rangana Warshamanage & Lucrezia Catapano
Likelihood-based docking of models in cryo-EM maps (em_placement) – Randy J Read
Flex-EM and TEMPy-REFF – Maya Topf & Tom Mulvaney
Validating glycans (Privateer) – Lou Holland & Phuong Thao Pham
EMDB: Deposition and Validation – Kyle Morris
AlphaFold Protein Structure Database & 3D-Beacons – Jennifer Fleming
Coot and Moorhen: – Lucrezia Catapano & George Coldstream
Model Validation – Agnel Joseph
Tutorials
CCP-EM Doppio based tutorials: Buccaneer-Modelcraft, CheckMySequence-FindMySequence, EM_placement, LocScale, Model-angelo, Refmac-Servalcat, TEMPy-REFF, Privateer
Buccaneer-Modelcraft tutorial and data
CheckMySequence-FindMySequence tutorial and data
em_placement tutorial and data
Model-Angelo tutorial and data