Contents

• User Guide
  • Getting Doppio
  • Installing Doppio
    • Linux
    • Mac
  • Starting Doppio
    • Linux
      • Desktop application
      • Web application
    • Mac
      • Desktop application
      • Web Application
    • Remote access via ssh port forwarding
  • Configuring Doppio
    • Finding RELION and CCP-EM programs
    • Finding additional packages
    • Choosing the project directory
  • Using Doppio
    • Overview
    • Creating a new job
    • Importing files
      • Selecting input files
    • Submitting jobs to a queue
      • Custom queue submission variables
    • Job actions
      • Set job alias
      • Clone job
      • Open in workflow
      • Recalculate results
      • Abort job
      • Delete job
      • Reference report
      • Metadata report
      • Project archive
      • Set job status
    • Switching projects and Doppio settings
    • Installing additional software packages
  • Using older Doppio versions
    • Getting Doppio
    • Linux
      • Desktop application
      • Web application
    • Mac
      • Desktop application
      • Web Application
  • Troubleshooting
    • Jobs are missing
    • The browser does not open after starting doppio-web
    • The browser displays an “Unauthorised” message
    • The browser was denied access to the file
    • Error while attempting to bind on address
    • SUID sandbox error
    • Frozen window or unavailable API
    • Logs
• Configuration
  • Configuring the CCP-EM Pipeliner
  • Doppio Settings
    • Configuring server settings
      • Host
      • Port
      • No browser
      • Debug mode
      • Base URL
      • Authentication token
    • Configuring application settings
      • apiCheckTimeoutMs
      • maxResultSizeMB
      • projectDirectory
      • suggestHiddenFilesAsInput
      • themeFile
    • Creating theme files
    • Theme file parameters
      • primary_color and secondary_color
      • font_family
      • code_font_family
      • banner_height
      • left_panel_min_width
      • appName
      • appLogo
      • visibleJobs
• Using external software with Doppio
  • How Doppio finds programs
  • Supported software
    • RELION
    • ModelAngelo
    • CCP4 v9.0
    • CCP-EM v1, build 20221108
    • Other software
• Security in Doppio
  • Overview
  • Details
  • The redirection file
  • Setting your own token
• Doppio Release Notes
  • Version 1.3.0
    • New jobs
    • Job updates
    • Doppio updates
    • Pipeliner updates
  • Version 1.2.1
    • New jobs
    • Job updates
    • Doppio updates
    • Pipeliner updates
  • Version 1.2.0
    • New jobs
    • Job updates
    • Doppio updates
    • Pipeliner updates
  • Version 1.1.0
    • New jobs
    • Job updates
    • Doppio updates
    • Pipeliner updates
  • Version 1.0.1
  • Version 1.0.0