Overview
The CCP-EM software suite is normally accessed via the Doppio interface. This provides access to a wide range of software, manages your project data, and includes a wider variety of utilities for understanding program output. The separate user guide gives information on installing and using Doppio.
Handling of jobs and data is done by the underlying CCP-EM Pipeliner framework. If you are interested in automating steps of the process, then it can be useful to work directly with Pipeliner. There is separate documentation for this.
Programs in the suite
The CCP-EM software suite provides access to a wide range of software for cryoEM, integrated into a common framework. Note that some are distributed by CCP-EM and others need to be obtained separately. A complete list and help with installation can be found in the user guide. Within Doppio, the JOB INFO button provides a summary of each task and underlying software. Supported software includes:
Image processing and map reconstruction
Map optimisation and utilities
Model building and refinement